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Aside from modifying the actual sample surface, one can also use the STM to tunnel electrons into a layer of electron beam photoresist on a sample, in order to do lithography.
This has the advantage of offering more control of the exposure than traditional electron beam lithography.
Another practical application of STM is atomic deposition of metals ( Au, Ag, W, etc.
) with any desired ( pre-programmed ) pattern, which can be used as contacts to nanodevices or as nanodevices themselves.

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