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Page "Restriction fragment length polymorphism" ¶ 6
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allele and ",
Such a " wild type " allele was historically regarded as dominant, common, and " normal ", in contrast to " mutant " alleles regarded as recessive, rare, and frequently deleterious.
In allele " A ", the genome is cleaved by a restriction enzyme at three nearby sites ( triangles ), but only the rightmost fragment will be detected by the probe.
p53 mutations can function as a " dominant negative ", meaning that a mutated p53 protein can prevent the function of normal protein from the un-mutated allele.
Between 45 and 54 repeats is considered a " grey zone ", with a premutation allele generally considered to be between 50 and 200 repeats in length.
Evolution is defined as " a change in the frequency of an allele within a gene pool ", an occurrence that causes a population's genetically inherited traits to change over successive generations.

allele and restriction
In allele " c " there are five repeats in the VNTR, and the probe detects a longer fragment between the two restriction sites.
In allele " d " there are only two repeats in the VNTR, so the probe detects a shorter fragment between the same two restriction sites.
Using restriction enzymes, it was discovered that a mutation on chromosome 5 particularly within the C1214T allele caused the adult onset form of Sandhoff Disease.

allele and site
This domain is responsible for the spread of the intein by cleaving DNA at an intein-free allele on the homologous chromosome, triggering the DNA double-stranded break repair ( DSBR ) system, which then repairs the break, thus copying the intein-coding DNA into a previously intein-free site.
Although any two unrelated people share about 99. 5 % of their DNA sequence, some people may have an A at a particular site on a chromosome, while others have a G. Such a site is known as a single nucleotide polymorphism ( SNP ), and each of the two possibilities is called an allele.
Most Duffy negative blacks carry a silent Fy-b allele with a single T to C substitution at nucleotide-46, impairing the promoter activity in erythroid cells by disrupting a binding site for the GATA1 erythroid transcription factor.
This hypothesis proposed that the gene products of each sinc allele contributed to a multimeric protein structure, which then formed a ' replication site ' for the scrapie agent.
The databases hosted at each site are different and hold the organism specific reference allele sequences and lists of STs for individual organisms.
If a mutation occurs in the annealing site, then the marker can no longer be used and the allele is turned into a null allele.

allele and 2
Then, p < sup > 2 </ sup > is the fraction of the population homozygous for the first allele, 2pq is the fraction of heterozygotes, and q < sup > 2 </ sup > is the fraction homozygous for the alternative allele.
If the first allele is dominant to the second, then the fraction of the population that will show the dominant phenotype is p < sup > 2 </ sup > + 2pq, and the fraction with the recessive phenotype is q < sup > 2 </ sup >.
For example, the gene encoding Insulin-like growth factor 2 ( IGF2 / Igf2 ) is only expressed from the allele inherited from the father.
This failure of panmixia leads to two important changes in overall population structure: ( 1 ). the component gamodemes vary ( through gamete sampling ) in their allele frequencies when compared with each other and with the theoretical panmictic original ( this is known as dispersion, and its details can be estimated using expansion of an appropriate binomial equation ); and ( 2 ).
Thus both A and B have allele frequency 1 / 2.
About 2 % of FA cases are X-linked recessive, which means that if the mother carries one mutated Fanconi anemia allele there is a 50 % chance that male offspring will present with Fanconi anemia.
90 ) and Colombians ( n = 93 ), the frequency of the-46T ( Duffy positive ) allele was 21. 7 %, 12. 2 % and 74. 7 % respectively.
FY * 2 silent is the most common allele in West African blacks and the high prevalence in this sample was interpreted as historical admixture.
Among 18 boxers with more than 12 professional bouts, those who possessed at least one ApoE4 allele had a higher CBI score ( mean 3. 9 ± 2. 3 ) compared to boxers without the allele ( mean 1. 8 ± 1. 2 ).
ALDH2 is an isozyme of ALDH and ALDH2 has a polymorphism ( ALDH2 * 2, Glu487Lys ) that makes ADLH2 inactive ; this allele is more prevalent among Southeast and East Asians and results in a failure to quickly metabolize acetaldehyde.
Horses with 2 copies of the cream allele also exhibit specific traits: cream-colored coats, pale blue eyes, and rosy-pink skin.
In about 50 % of Asians, the resulting increased acetaldehyde accumulation is further increased by another gene variant, the mitochondrial ALDH2 * 2 allele, which results in a less performing acetaldehyde dehydrogenase enzyme, responsibile for the metabolism of acetaldehyde.
30 % to 50 % of people of Chinese and Japanese ancestry have at least one ALDH * 2 allele.

allele and has
The Thr111Ala allele ( rs1426654 ) has been shown to be a major factor in the light skin tone of Europeans in a number of studies.
It has an allele, Ser192Tyr ( rs1042602 ), found solely in 40 – 50 % of Europeans and linked to light-coloured skin in studies of mixed-race South Asian and African-American populations.
The His615Arg ( rs1800414 ) allele has been shown to account for about 8 % of the skin tone difference between African and East Asian populations.
A heterozygote ( heterozygous individual ) has at least half of the normal enzyme activity level, due to expression by the wild-type allele.
Studies have demonstrated that new gene mutations for achondroplasia are exclusively inherited from the father and occur during spermatogenesis ; it is theorized that oogenesis has some regulatory mechanism that hinders the mutation from originally occurring in females ( although females are still readily able to inherit and pass on the mutant allele ).
Dominance rules for sex-linked gene loci are determined by their behavior in the female: because the male has only one allele, that allele is always expressed regardless of whether it is dominant or recessive.
The disease has a variable penetration and about 1 in 10 people of this demographic carry a mutation in one of the genes regulating iron metabolism, the most common allele being the C282Y allele in the HFE gene.
If this happens, the red allele has been lost permanently in the population, while the remaining blue allele has become fixed: all future generations are entirely blue.
In humans, a common genetic variation in the promotor region of the serotonin transporter ( the SERT-long and-short allele: 5-HTTLPR ) has been shown to affect the development of several regions of the thalamus in adults.
An allele with low penetrance will only sometimes produce the symptom or trait with which it has been associated at a detectable level.
In population genetics it has been employed for a statistical description of the allele frequencies in the components of a sub-divided population.
Together, this means that 36 % of diploid individuals would be expected to carry an allele that has a frequency of 20 %.
In some cases conditional alleles can be used so that the gene has normal function until the conditional allele is activated.
In genetics, a recessive gene is an allele that causes a phenotype ( visible or detectable characteristic ) that is only seen in a homozygous genotype ( an organism that has two copies of the same allele ) and never in a heterozygous genotype.
The most common one is that the allele is soon lost altogether, but the other possibility is that the allele survives and within a few generations has become much more dispersed throughout the population.
The new allele has a frequency of about 50 % in populations of the Middle East and Europe, it is less frequent in East Asia, and has low frequencies among Sub-Saharan African populations.

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