Phylogenetic analyses place these genera into the following groups ( not all of these are considered amoeboid ( or " amoebas ") by all sources ):

Phylogenetic analyses have become essential in researching the evolutionary tree of life.

Phylogenetic analyses based on 79 ribosomal proteins indicated a position of Sipuncula within Annelida.

Phylogenetic analyses support Vitaceae as the sister-group to all other rosids ( Jansen et al.

Phylogenetic analyses of Vitis ( Vitaceae ) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids.

Phylogenetic analyses have shown that mimids are most closely related to starlings ( Sibley & Monroe 1990, Zuccon et al.

Phylogenetic analyses of ITS, nuclear large subunit and mitochondrial small subunit rDNA sequences from a variety of North American species has delineated five distinct clades within the core Laetiporus clade ; sulphureus clade I contains white-pored L. sulphureus isolates, while sulphureus clade II contains yellow-pored L. sulphureus isolates.

Phylogenetic analyses shows the Sclerodermataceae, Boletinellaceae and Gyroporaceae appear to form a discrete group within the Boletales, and together with the Pisolithaceae, the Astraceae and the Calostomaceae, are grouped under the suborder Sclerodermatineae.

Phylogenetic analyses of sequences of five plastid DNA regions, rbcL, rps4, trnL – F, matK, and rps16, confirm most aspects of the traditional classification of the Iridaceae in four subfamilies and the evolutionary patterns that they imply, importantly the sister relationship of Isophysidoideae to the remainder of the family and the monophyly of Iridoideae.

Phylogenetic analyses using homologous sequences from all extant edentate groups indicates that the Mylodontidae were closer related to Megalonychidae than to Bradypodidae.

Phylogenetic relationships of oryzomyine rodents ( Muroidea: Sigmodontinae ): separate and combined analyses of morphological and molecular data.

Phylogenetic analyses of internal transcribed spacer 1 sequences revealed a clade composed of all North American sequences plus a subset of Italian and French sequences.

Phylogenetic analyses of ITS, nuclear large subunit and mitochondrial small subunit rDNA sequences from a variety of North American species have delineated five distinct clades within the core Laetiporus clade:

Phylogenetic position and generic limits of Arabidopsis ( Brassicaceae ) based on sequences of nuclear ribosomal DNA: Annals of the Missouri Botanical Garden 90 ( 4 ): 603-612

* Moyle, Robert G. & Marks, Ben D. ( 2006 ): Phylogenetic relationships of the bulbuls ( Aves: Pycnonotidae ) based on mitochondrial and nuclear DNA sequence data.

The Evolution of Araliaceae: A Phylogenetic Analysis Based on ITS Sequences of Nuclear Ribosomal DNA.

* ( 2001 ): Phylogenetic relationships in Pleurothallidinae ( Orchidaceae ): combined evidence from nuclear and plastid DNA sequences.

* ( 1994 ): Phylogenetic relationships among falcon species ( genus Falco ) according to DNA sequence variation of the cytochrome b gene.

; Seibold, I .; Bednarek, W .; Brüning, H .; Gaucher, P .; Ristow, D .; Scharlau, W .; Schmidl, D. & Wink, Michael ( 1994 ): Phylogenetic relationships among falcon species ( genus Falco ) according to DNA sequence variation of the cytochrome b gene.

; Seibold, I .; Bednarek, W .; Brüning, H .; Gaucher, P .; Ristow, D .; Scharlau, W .; Schmidl, D. & Wink, Michael ( 1994 ): Phylogenetic relationships among falcon species ( genus Falco ) according to DNA sequence variation of the cytochrome b gene.

" Mitochondrial DNA Phylogenetic Definition of a Group of ‘ Arid-Zone ’ Carduelini Finches "( PDF ).

" Phylogenetic analysis of Leucojum and Galanthus ( Amaryllidaceae ) based on plastid matK and nuclear ribosomal spacer ( ITS ) DNA sequences and morphology ".

Phylogenetic relationships in Monanthes ( Crassulaceae ) based on morphological, chloroplast and nuclear DNA variation.

; Seibold, I .; Bednarek, W .; Brüning, H .; Gaucher, P .; Ristow, D .; Scharlau, W .; Schmidl, D. & Wink, Michael ( 1994 ): Phylogenetic relationships among falcon species ( genus Falco ) according to DNA sequence variation of the cytochrome b gene.

; Seibold, I .; Bednarek, W .; Brüning, H .; Gaucher, P .; Ristow, D .; Scharlau, W .; Schmidl, D. & Wink, M. ( 1994 ): Phylogenetic relationships among falcon species ( genus Falco ) according to DNA sequence variation of the cytochrome b gene.

Phylogenetic relationships of Cranichidinae and Prescottiinae ( Orchidaceae, Cranichideae ) inferred from plastid and nuclear DNA sequences.

Phylogenetic trees are typically created from DNA, RNA or protein sequence data.

" Phylogenetic studies of Ophioglossaceae: evidence from rbcL and trnL-F plastid DNA sequences and morphology.

; Seibold, I .; Bednarek, W .; Brüning, H .; Gaucher, P .; Ristow, D .; Scharlau, W .; Schmidl, D. & Wink, Michael ( 1994 ): Phylogenetic relationships among falcon species ( genus Falco ) according to DNA sequence variation of the cytochrome b gene.

Mitochondrial DNA Phylogenetic Definition of a Group of ‘ Arid-Zone ’ Carduelini Finches.

* ( 1994 ): Phylogenetic relationships among falcon species ( genus Falco ) according to DNA sequence variation of the cytochrome b gene.

Phylogenetic relationships within the Gentianales based on NDHF and RBCL sequences, with particular reference to the Loganiaceae.

Phylogenetic relationships within the Gentianales based on NDHF and RBCL sequences, with particular reference to the Loganiaceae

* Phylogenetic analysis of the order Nymphaeales based on the nucleotide sequences of the chloroplast

Phylogenetic relationships in the Caesalpinioideae ( Leguminosae ) as inferred from chloroplast trnL intron sequences.

Phylogenetic trees among a nontrivial number of input sequences are constructed using computational phylogenetics methods.

Phylogenetic analysis of some Turdinae birds based on mitochondrial cytochrome b gene sequences.

Phylogenetic relationships among the delphinid cetaceans based on full cytochrome b sequences.

* Heidrich, Petra ; Amengual, José F. & Wink, Michael ( 1998 ): Phylogenetic relationships in Mediterranean and North Atlantic shearwaters ( Aves: Procellariidae ) based on nucleotide sequences of mtDNA.

* Heidrich, Petra ; Amengual, José F. & Wink, Michael ( 1998 ): Phylogenetic relationships in Mediterranean and North Atlantic shearwaters ( Aves: Procellariidae ) based on nucleotide sequences of mtDNA.

Phylogenetic analysis of the RNA and protein sequences of poliovirus ( PV ) suggests that PV may have evolved from a C-cluster coxsackie A virus ancestor, that arose through a mutation within the capsid.

Phylogenetic relationships among the delphinid cetaceans based on full cytochrome b sequences.

Phylogenetic Position of the Tubercle Bacilli within the Genus Mycobacterium The blue triangle corresponds to tubercle bacilli sequences that are identical or differing by a single nucleotide.

Phylogenetic relationships among the delphinid cetaceans based on full cytochrome b sequences.

Phylogenetic relationships among the delphinid cetaceans based on full cytochrome b sequences.

Phylogenetic relationships among the delphinid cetaceans based on full cytochrome b sequences.

Phylogenetic relationships among the delphinid cetaceans based on full cytochrome b sequences.

Phylogenetic relationships in Buxaceae based on nuclear internal transcribed spacers and plastid ndhF sequences.

Phylogenetic trees based on 16S rRNA sequences have shown that the genus Actinomyces is quite diverse, exhibiting polyphyletic branching into several clusters.